PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10725_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 492aa MW: 53190.7 Da PI: 6.7271

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10725_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	121	146	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C +C ksF ks++++Hi+ H cra_locus_10725_iso_2_len_2129_ver_3 121 FVCAapHCLKSFLKKSDFVSHINEnH 146 899999****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00162	0.00923	70	104	No hit	No description
PROSITE pattern	PS00518	0	86	95	IPR017907	Zinc finger, RING-type, conserved site
PROSITE profile	PS50157	9.827	121	151	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	123	146	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MLQIRLSKPS SEGGATKPLP ADSVTVACPD HLILADLPVA KSLGSPTANA LVKIIGRRSR 60 RQLGERVHFC VHCDLPIAIY GRLSPCEHVF CLDCARSDSL CFLCDERIQK IQTIKMMEGL 120 FVCAAPHCLK SFLKKSDFVS HINENHADLL PPSAEKDGND SEAISARKPA ASDSTVQAPP 180 RPSFSGSNSQ VHDREAYRMQ SRDQPPTRPV MQPKGMPAFP GPIQNHLLEQ QADNNAPPGF 240 DRFGPQNRFA QQTFDSPSGM RQELGQVQDK QQGLVPESPF REYPMQPNQP PNFAVPINPN 300 PAPAQFGYPH FVPDGSQPFY GAYEMARPES TPEVGPEQGS LLGFPPGPAG GMNFGESYPR 360 PWNMGPAVGS FDPSAGPGTV DGFMSASDPQ GRPASFQGDY GRNQGILPSN LPPSSANKGM 420 DSAQGGNSMD PRDGKGILAP QPVSLPPPPP PFAVHLPQAK RGKFYSNEMN NDGQSFGWQN 480 EKRDSFGSSS RD

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MLQIRLSKPS SEGGATKPLP ADSVTVACPD HLILADLPVA KSLGSPTANA LVKIIGRRSR  60
RQLGERVHFC VHCDLPIAIY GRLSPCEHVF CLDCARSDSL CFLCDERIQK IQTIKMMEGL  120
FVCAAPHCLK SFLKKSDFVS HINENHADLL PPSAEKDGND SEAISARKPA ASDSTVQAPP  180
RPSFSGSNSQ VHDREAYRMQ SRDQPPTRPV MQPKGMPAFP GPIQNHLLEQ QADNNAPPGF  240
DRFGPQNRFA QQTFDSPSGM RQELGQVQDK QQGLVPESPF REYPMQPNQP PNFAVPINPN  300
PAPAQFGYPH FVPDGSQPFY GAYEMARPES TPEVGPEQGS LLGFPPGPAG GMNFGESYPR  360
PWNMGPAVGS FDPSAGPGTV DGFMSASDPQ GRPASFQGDY GRNQGILPSN LPPSSANKGM  420
DSAQGGNSMD PRDGKGILAP QPVSLPPPPP PFAVHLPQAK RGKFYSNEMN NDGQSFGWQN  480
EKRDSFGSSS RD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2mq1_A	1e-16	67	146	1	85	E3 ubiquitin-protein ligase Hakai
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786415.1	0.0	PREDICTED: E3 ubiquitin-protein ligase Hakai
Refseq	XP_009786416.1	0.0	PREDICTED: E3 ubiquitin-protein ligase Hakai
Refseq	XP_016484631.1	0.0	PREDICTED: E3 ubiquitin-protein ligase Hakai-like
TrEMBL	A0A068UD82	0.0	A0A068UD82_COFCA; Uncharacterized protein
STRING	VIT_08s0007g01710.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6404	4	5